Organize Archives - Papers https://www.papersapp.com/docs-category/organize/ Your personal library of research Thu, 04 Dec 2025 21:35:21 +0000 en-US hourly 1 https://wordpress.org/?v=6.9 https://www.papersapp.com/wp-content/uploads/2018/11/cropped-readucbe-icon-32x32.png Organize Archives - Papers https://www.papersapp.com/docs-category/organize/ 32 32 Introduction to Custom Fields https://www.papersapp.com/help-center/introduction-to-custom-fields/ https://www.papersapp.com/help-center/introduction-to-custom-fields/#respond Thu, 31 Jul 2025 18:46:58 +0000 https://www.papersapp.com/?post_type=docs&p=32730 With a subscription to Papers Pro, you now have the ability to add two custom fields in the metadata of your articles. For now, this feature is limited to Shared…

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With a subscription to Papers Pro, you now have the ability to add two custom fields in the metadata of your articles. For now, this feature is limited to Shared Libraries of which you are the owner, and you must have an active subscription to Papers Pro.

In order to access this feature, click on the Settings of the Shared Library you’d like to apply these custom fields to and look for the option “manage custom fields”




Once you click on “+ Add Field”, you’ll see the following options



In these fields, you’ll want to populate the following information:

Field name: what the name of this new field will be
CSL name: how this custom field will appear in your selected citation style. We recommend using the same name as your field name.

Section: If you’d like for your custom fields to appear in their own designated section, provide the name for that section. Otherwise, leave this space blank.

Type: how this metadata will appear. For example, here the thesis level field will provide a ticker to mark the number, while university location will provide a text field to directly type in the location.

Once you save your fields, you can view them by navigating to any article in that Shared Library and clicking here:



You can also search your custom fields directly by searching for: custom_metadata.{cls_name}:”{your search query}” and filling in your custom metadata.

Remember, you’ll need to fill in the CSL name, not the field name.

For example, in the example above, one of our custom fields is “university location” and we have marked the location as Boston, MA. To perform a search for all articles where Boston has been listed as the “university location”, we would search for:

custom_metadata.university-location:”Boston”

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Papers Library View: Organizing and Customizing Your Library https://www.papersapp.com/help-center/papers-library-view-organizing-and-customizing-your-library/ https://www.papersapp.com/help-center/papers-library-view-organizing-and-customizing-your-library/#respond Fri, 25 Jul 2025 18:22:24 +0000 https://www.papersapp.com/?post_type=docs&p=32712 Papers offers several ways to organize and customize your library view to suit your workflow. To get started, right-click on any column heading in your library. A menu will appear…

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Papers offers several ways to organize and customize your library view to suit your workflow.

To get started, right-click on any column heading in your library. A menu will appear showing all available viewing options.

Any option you toggle on will appear as a column in your library view.
Tip: You can drag column headings to reorder them at any time. Just look for the move cursor icon.

Regardless of which options you choose to display, you can mark an article as a favorite by right-clicking the reference and selecting “Add Flag.”

This will add a small flag icon to the reference, visible in your library as long as the “Flag” column is enabled.

You can also apply color labels by enabling the “Color Label” column in your view options. Then, hover over that column in the reference row you want to label. A circle outline will appear—click it to choose and apply a color.

Similarly, to give a reference a star rating, enable the “Rating” column. Hovering over this column for any reference will display a 5-star scale, allowing you to assign a rating.

You can also mark any reference in your library as “read” or “unread” by right-clicking over the reference and looking for the “mark as read” and “mark as unread” options

Note that references which are unread will appear bold in the Papers library view.

By taking advantage of these customizable options, you can tailor your Papers library view to better fit your research and reading habits. Whether you’re flagging key papers, adding color-coded labels, or rating your references, these tools help keep your library organized and easy

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Citing organizations as authors https://www.papersapp.com/help-center/citing-organizations-as-authors/ https://www.papersapp.com/help-center/citing-organizations-as-authors/#respond Thu, 10 Jul 2025 18:54:41 +0000 https://www.papersapp.com/?post_type=docs&p=32611 Citing an organization as the author in Papers currently requires some manual work, though we’re working on improving this in the future. In order for an organization to format correctly…

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Citing an organization as the author in Papers currently requires some manual work, though we’re working on improving this in the future.

In order for an organization to format correctly as an author, you’ll want to add a tilde – ~ – to the end of the organization name in your Papers library.

For example, the World Health Organization would instead be the World Health Organization~

which will allow

to become

Repeat this process with any other organizations you’d like to cite.

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Authors with multi-text names https://www.papersapp.com/help-center/authors-with-multi-text-names/ https://www.papersapp.com/help-center/authors-with-multi-text-names/#respond Thu, 01 May 2025 14:26:48 +0000 https://www.papersapp.com/?post_type=docs&p=32573 If you are citing with an author who’s first or surname is multi-text such as John David or De Santos using SmartCite the  add-in will only recognize the first text of…

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If you are citing with an author who’s first or surname is multi-text such as John David or De Santos using SmartCite the  add-in will only recognize the first text of the author’s name as the first name and the last text as the last name.

Our team is aware of this and our team is working on having the application recognize these names in a future update of the application.

A workaround for this is to enter a “no backspace” (nbsp) character that will insert a space between the multi-part surnames. To enter this character, put your cursor where you want to insert the no-backspace and use one of the following commands:

Apple keyboardoption + space bar
Windows keyboardalt, type A0
Linux keyboardctrl+shift, type UA0

Alternatively, you can also copy the nbsp character using this website to be place in-between the text for the first or surname when editing the metadata of the desired article.

After saving the metadata associated with the entry will then recognize it as ‘one’ text and show it correctly when citing.  

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Introduction to Smart Lists https://www.papersapp.com/help-center/introduction-to-smart-lists/ https://www.papersapp.com/help-center/introduction-to-smart-lists/#respond Wed, 30 Apr 2025 20:35:41 +0000 https://www.papersapp.com/?post_type=docs&p=32572 Smart Lists are a great way to keep your library organized; you tell them to organize things in a certain way, and every time you add something to your library,…

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Smart Lists are a great way to keep your library organized; you tell them to organize things in a certain way, and every time you add something to your library, the smart list will look to see if that item meets the rule you set for the collection and if so, bring it in automatically. 

Your Smart List query can be anything you can search for in your library and be as complex as you need to narrow down results. See some popular examples below.

(To add these to your personal library, simply click on the one you would like to add and you’ll be taken to that Smart List’s new location in your library)

Recently Added (Last 7 days) 

Recently Added (Last 14 days)

Recently Added (Last 30 days) 

All Annotated

Unread 

Unread within papers added in last 7 days

Unread within papers added in last 14 days

Unread within papers added in last 30 days

References with PDF

References missing PDF

Unmatched

Recently Read (Last 7 Days)

Recently Read (Last 14 Days)

Recently Read (Last 30 Days)

To make your own Smart List, click on the Settings icon of your personal library and select “Create Smart List”:


With the Smart List above set up, everytime an article is added to “My Papers”, the app will check to see if the word “lexapro” appears in the article and, if it does, it will automatically add it to the Smart List “OCD Research”.

To make your own Smart List, click on the Settings icon of your personal library and select “Create Smart List”:

With the Smart List above set up, everytime an article is added to “My Papers”, the app will check to see if the word “lexapro” appears in the article and, if it does, it will automatically add it to the Smart List “OCD Research”.

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How Do I Organize My Articles in Papers? https://www.papersapp.com/help-center/how-do-i-organize-my-articles-in-papers/ https://www.papersapp.com/help-center/how-do-i-organize-my-articles-in-papers/#respond Fri, 07 Feb 2025 18:07:50 +0000 https://www.papersapp.com/?post_type=docs&p=32445 You can easily organize your PDFs in Papers by creating Lists or Smart Lists. To create a list click on the gear icon next to All Papers.  From there you…

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You can easily organize your PDFs in Papers by creating Lists or Smart Lists.

To create a list click on the gear icon next to All Papers. 

From there you will need to select Create List or Create Smart List. 

For Lists you simply name your List (you can also select if it needs to be nested into another list) and then drag and drop your PDFs.

Screenshot showing how to create a List in ReadCube Papers

Lists in Papers behave like playlists, rather than folders. An article can exist in more than one list at a time. For instance, if you have a list of articles about cancer and another list of articles about mitosis, you can file the article “Mad2 over expression promotes aneuploidy and tumorigenesis in mice” in both lists, since it is relevant to both cancer and mitosis.

If you delete a list in Papers, the PDFs in that list will not be deleted. They will remain in your library.

For Smart Lists you can create a query for your the list and your library will import all current and new entries that are part of the query into the list.

If you need help building your Lists or Smart Lists go ahead and email Papers Support!

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An Article Was Mislabelled as a Supplement (Or Vice Versa) https://www.papersapp.com/help-center/fix-mislabelled-articles-and-supplements-in-papers-reference-manager/ https://www.papersapp.com/help-center/fix-mislabelled-articles-and-supplements-in-papers-reference-manager/#respond Fri, 07 Feb 2025 16:28:47 +0000 https://www.papersapp.com/?post_type=docs&p=32437 When importing, Papers may tag a supplement as an article or vice versa. To correct this, when in your library view click on the file icon and you’ll see thumbnails…

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When importing, Papers may tag a supplement as an article or vice versa. To correct this, when in your library view click on the file icon and you’ll see thumbnails of the files associated to the paper. Click on the More button to set a supplement file as a primary file. 

You can also delete a linked file this way. Please note – these changes can only be done from the library view.

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How to export files from the Papers web application https://www.papersapp.com/help-center/how-to-export-files-from-the-papers-web-application/ https://www.papersapp.com/help-center/how-to-export-files-from-the-papers-web-application/#respond Wed, 04 Dec 2024 14:00:00 +0000 https://www.papersapp.com/?post_type=docs&p=32153 You have the ability to export your PDFs directly from the Papers web application. To export a single PDF file from the web application, navigate to the reference in question, right-click…

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You have the ability to export your PDFs directly from the Papers web application.

To export a single PDF file from the web application, navigate to the reference in question, right-click on it and select “Download File”:

You will then receive a prompt asking you to confirm your download location and the download will begin.

To export PDFs of your entire Library or List, navigate to the Settings of the Library or List in question by clicking on the cog icon and select “Export PDFs”.

Please note: if the option “Export PDFs” is greyed out, it has not been enabled by your organization. For details, please reach out to your administrator. 

You’ll then see a window pop up asking you to set your file naming convention for the downloads:

Once you have made you selection, a popup will appear informing you that those PDFs are being exporting and that an e-mail with a link will soon be sent to the e-mail address you have on file with Papers.

(Note: If you are unsure what e-mail address this is, click the Papers icon on the top left of the web app)

In a few minutes (time will vary depending on the number and size of the files), you will receive an e-mail from Papers Alerts at alerts@readcube.com with a message stating: “your PDF export is available for download here”. Clicking “here” will start the download.

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How to Organize Articles in Papers: A Step-by-Step Guide https://www.papersapp.com/help-center/how-to-organize-articles-in-papers-a-step-by-step-guide/ https://www.papersapp.com/help-center/how-to-organize-articles-in-papers-a-step-by-step-guide/#respond Wed, 04 Dec 2024 14:00:00 +0000 https://www.papersapp.com/?post_type=docs&p=32049 The following information and screenshots relate to the latest version of Papers. For instructions on the classic version, please click here. Papers makes organizing your library simple with Lists and Smart…

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The following information and screenshots relate to the latest version of Papers. For instructions on the classic version, please click here.

Papers makes organizing your library simple with Lists and Smart Lists. Here’s how to use these features to keep your articles and PDFs well-organized:

Creating a List in Papers

First, click on the gear icon next to My Papers.

Next, select “Create List” or “Create Smart List.”

For a standard List:

  • Add a name for your List.
  • Optionally, nest the List within another List for better organization.
  • Drag and drop PDFs into the List.

Lists function like playlists rather than folders—meaning an article can belong to multiple Lists simultaneously. For example, the article “Mad2 overexpression promotes aneuploidy and tumorigenesis in mice” can appear in a List about cancer and another about mitosis, as it relates to both topics.

Please Note: Deleting a List does not remove its PDFs from your library. The articles remain stored in your library.

Creating a Smart List in Papers

Smart Lists are dynamic and update automatically based on criteria you set.

By using Lists and Smart Lists, you can efficiently organize and access your research in Papers.

If you need help building a List or Smart List, please contact Papers Support.

Papers Classic

The following instructions are for the classic version of Papers.

Creating a List in Papers

First, click on the gear icon next to My Papers.

Next, select “Create List” or “Create Smart List.”

For a standard List:

  • Add a name for your List.
  • Optionally, nest the List within another List for better organization.
  • Drag and drop PDFs into the List.

Lists function like playlists rather than folders—meaning an article can belong to multiple Lists simultaneously. For example, the article “Mad2 overexpression promotes aneuploidy and tumorigenesis in mice” can appear in a List about cancer and another about mitosis, as it relates to both topics.

Please Note: Deleting a List does not remove its PDFs from your library. The articles remain stored in your library.

Creating a Smart List in Papers

Smart Lists are dynamic and update automatically based on criteria you set.

By using Lists and Smart Lists, you can efficiently organize and access your research in Papers.

If you need help building a List or Smart List, please contact Papers Support.

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CSV Import/Export https://www.papersapp.com/help-center/how-to-export-and-import-csv-files/ https://www.papersapp.com/help-center/how-to-export-and-import-csv-files/#respond Wed, 04 Dec 2024 14:00:00 +0000 https://www.papersapp.com/?post_type=docs&p=32188 Papers allows you to import or export a library as a .csv (comma-separated values) file. This format will allow you to make batch edits to your information using a spreadsheet…

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Papers allows you to import or export a library as a .csv (comma-separated values) file. This format will allow you to make batch edits to your information using a spreadsheet (with software such as Excel).

What is a CSV file?

A CSV file has a fairly simple structure. It’s a list of data separated by commas. For example, if you have a few contacts in a contact manager and you export them as a CSV file, you would get a file that looks like this:

Essentially, this is all a CSV file is. They can be far more complicated with thousands of lines, a large number of entries for each line and/or long strings of text.  Some CSV files may not even have the headers at the top, and some may use quotation marks to surround each bit of data.However, this is the basic format.

What kind of CSV’s can I import?
There are many different types of CSV files and while most should work with Papers, there will be some that may not. However, most CSV’s should work if they have at least one of the following fields that are required when you import a CSV:

Only one of the above fields is required. This allows you to import a list full of DOI’s or some titles of references. Note that if there is no identifier (such as DOI, PMID, etc.) we won’t be able to fill in any more metadata information for you (as the app requires identifiers to search for and locate metadata information of a reference). 

For instance, the following CSV will allow you to import these DOIs and get information on them. If any of the articles are open access ones the app will automatically import the PDFs for them (from this particular example, the last article is an open access one). You can get a copy of this file at the bottom of the page (DOIExample.csv).

Another common CSV you might want to import is a PubMed search result. You can find this option under “Save” and by changing the format to CSV:

Results will be formatted like:

These have a lot more information and will import automatically into your library. To get an example of this file see below (csv-ElephantSh-set.csv).

What kind of fields does the CSV file support?

Any of the fields that are part of our Advanced Search Syntax article can be imported. The length of these items can only be 256 characters long. Importing other fields will work but we currently hide these fields in the app. We will be adding a way to visualize these fields in the future.

Can I import a TSV(Or another file that has different delimiters)?

Currently, we don’t support TSV but the easiest way to fix this is to open the TSV in a program like Excel and then save it as a CSV file. This will allow you to use other file formats that use different delimiters to separate fields. If you can’t import the file in Excel you can always use the Data tab and import from file or database:

Exporting CSV from Papers

To export from Papers all you need to do is hit the gear next to a library and click export as “Comma-separated Values”. This will open up a dialog box that allows you to save the CSV to your computer and default to the library’s name. Once saved you can edit the file in excel or any other program to edit the CSV. You can then import this file back into the app to bulk update any of the items you had updated.

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